Milkey A, MH Chen, YB Wang, A Li, & PO Lewis. (2025). The Sequential Multispecies Coalescent. bioRxiv, 2025-01.

Wang YB, A Milkey, A Li., MH Chen, L Kuo, & PO Lewis. (2023). LoRaD: Marginal likelihood estimation with haste (but no waste). Systematic Biology, 72(3), 639-648.

Hodge JR, Y Song, MA Wightman, A Milkey, B Tran, A Stajner, AS Roberts, CR Hemingson, PC Wainwright, SA Price. (2021). Constraints on the Ecomorphological Convergence of Zooplanktivorous Butterflyfishes Integrative Organismal Biology.